# create hbonds for the tetrahedorn so they can have a # different appearance from the measurement lines: connect (atomno=5) (atomno=2) hbond connect (atomno=5) (atomno=3) hbond connect (atomno=5) (atomno=4) hbond connect (atomno=3) (atomno=2) hbond connect (atomno=4) (atomno=2) hbond connect (atomno=3) (atomno=4) hbond select all color hbonds [x00ff00] hbonds 0.01 hbonds off measure 1 2 measure 1 3 measure 1 4 measure 1 5 color measures [x00ff00] set measurements 0 # renders line thickness (0 turns off lines) set measurement off #turns off numbers isosurface scale 0.9 lcaoCartoon "lp" (atomno=1) isosurface scale 0.8 lcaoCartoon "sp3a" (atomno=1) isosurface scale 0.8 lcaoCartoon "sp3b" (atomno=1) isosurface scale 0.8 lcaoCartoon "sp3c" (atomno=1) color $lcao1_lp translucent lightblue color $lcao2_sp3a translucent lightblue color $lcao3_sp3b translucent lightblue color $lcao4_sp3c translucent lightblue select (atomno=2, atomno=3) label %e color labels blue font label 14 sans bold set labeloffset 0 0 #set labelgroup select atomno=1 label O color labels white font label 14 sans bold set labeloffset 0 1