# Jmol state version 11.6.RC9_dev 2008-08-14 16:55; # fullName = "html"; # documentBase = "file:/Users/friedar/Projects/concord/activities/proteins-III/proteins-III-live/"; # codeBase = "file:/Users/friedar/Projects/concord/activities/proteins-III/proteins-III-live/"; function _setWindowState(); # height 250; # width 392; stateVersion = 1106000; backgroundColor = "[x000000]"; axis1Color = "[xff0000]"; axis2Color = "[x008000]"; axis3Color = "[x0000ff]"; ambientPercent = 45; diffusePercent = 84; specular = true; specularPercent = 22; specularPower = 40; specularExponent = 6; statusReporting = true; end function; function _setFileState(); set allowEmbeddedScripts false; set autoBond true; set appendNew true; set appletProxy ""; set applySymmetryToBonds false; set bondRadiusMilliAngstroms 150; set bondTolerance 0.45; set defaultDirectory ""; set defaultLattice {0.0 0.0 0.0}; set defaultLoadScript ""; set defaultVDW Jmol; set forceAutoBond false; set loadFormat "http://www.rcsb.org/pdb/files/%FILE.pdb"; set minBondDistance 0.4; set pdbSequential false; set pdbGetHeader false; set percentVdwAtom 20; set smartAromatic true; ; zap; end function; function _setVariableState(); set defaultanglelabel "%VALUE %UNITS"; set defaultcolorscheme "Jmol"; set defaultdirectory ""; set defaultdistancelabel "%VALUE %UNITS"; set defaultdrawarrowscale 0.5; set defaultlattice "{0 0 0}"; set defaultloadscript ""; set defaulttorsionlabel "%VALUE %UNITS"; set defaulttranslucent 0.5; set defaultvdw "Jmol"; set allowembeddedscripts true; set allowrotateselected false; set appletproxy ""; set applysymmetrytobonds false; set autobond true; set autofps false; set axes window; set axesmode 0; set axesscale 2.0; set bondmodeor false; set bondradiusmilliangstroms 150; set bondtolerance 0.45; set cartoonrockets false; set chaincasesensitive false; set dataseparator "~~~"; set delaymaximumms 0; set dipolescale 1.0; set disablepopupmenu false; set displaycellparameters true; set dotdensity 3; set dotsselectedonly false; set dotsurface true; set drawhover false; set drawpicking false; set dynamicmeasurements false; set ellipsoidarcs false; set ellipsoidaxes false; set ellipsoidaxisdiameter 0.02; set ellipsoidball true; set ellipsoiddotcount 200; set ellipsoiddots false; set ellipsoidfill false; set forceautobond false; set greyscalerendering false; set hbondsbackbone false; set hbondssolid false; set helppath "http://www.stolaf.edu/academics/chemapps/jmol/docs/index.htm"; set hermitelevel 0; set hidenameinpopup false; set hidenavigationpoint false; set highresolution false; set historylevel 0; set hoverdelay 0.5; set isosurfacepropertysmoothing true; set justifymeasurements false; set loadformat "http://www.rcsb.org/pdb/files/%FILE.pdb"; set measureallmodels false; set measurementlabels true; set messagestylechime false; set minbonddistance 0.4; set navigationperiodic false; set navigationspeed 5.0; set pdbgetheader false; set pdbsequential false; set percentvdwatom 20; set pickingspinrate 10; set picklabel ""; set pointgroupdistancetolerance 0.2; set pointgrouplineartolerance 8.0; set propertyatomnumberfield 0; set propertycolorscheme "roygb"; set propertydatafield 0; set quaternionframe "c"; set rangeselected false; set ribbonaspectratio 16; set ribbonborder false; set rocketbarrels false; set selectallmodels true; set selecthetero true; set selecthydrogen true; set sheetsmoothing 1.0; set showhiddenselectionhalos false; set showhydrogens true; set showmeasurements true; set showmultiplebonds true; set shownavigationpointalways false; set smartaromatic true; set solventprobe false; set solventproberadius 1.2; set ssbondsbackbone false; set stereodegrees 5; set strandcountformeshribbon 7; set strandcountforstrands 5; set testflag1 false; set testflag2 false; set testflag3 false; set testflag4 false; set tracealpha true; set usenumberlocalization true; set vectorscale 1.0; set vibrationperiod 1.0; set vibrationscale 1.0; set wireframerotation false; set zoomlarge true; set zshade false; #user-defined variables; # --none--; # label defaults; select none; color label none; background label none; set labelOffset 4 4; set labelAlignment left; set labelPointer off; font label 13.0 SansSerif Plain; end function; function _setModelState(); measures delete; select *; set measures nanometers; font measures 15.0 SansSerif Plain; select measures ({null}); boundBox off; set fontScaling false; end function; function _setPerspectiveState(); set perspectiveModel 11; set scaleAngstromsPerInch 0.0; set perspectiveDepth true; set visualRange 5.0; set cameraDepth 3.0; boundbox corners {-10.0 -10.0 -10.0} {10.0 10.0 10.0} # volume = 8000.0; center {0.0 0.0 0.0}; moveto 0.0 {0 0 1 0} 100.0 0.0 0.0 {0.0 0.0 0.0} 10.0 {0.0 0.0 0.0} 0.0 0.0 50.0;; slab 100;depth 0; set spinX 0; set spinY 30; set spinZ 0; set spinFps 30; end function; function _setSelectionState(); set hideNotSelected false; end function; function _setState(); initialize; set refreshing false; _setWindowState; _setFileState; _setVariableState; _setModelState; _setPerspectiveState; _setSelectionState; set refreshing true; set antialiasDisplay false; set antialiasTranslucent true; set antialiasImages true; end function; _setState;