#console on #set debugscript on hover off display none # must be called prior to echos: #set fontscaling true refresh moveto /* time, axisAngle */ 0.0 { 770 282 573 98.07} /* zoom, translation */ 99.24 0.0 0.0 /* center, rotationRadius */ {1.3679996 -1.7515001 -5.9615006} 20.098276 /* navigation center, translation, depth */ {0.0 0.0 0.0} 8.439582 11.647305 50.0; zoomto 0 (all) 0 set echo none color echo yellow font echo 14 sans bold set echo area1Echo 0% 85%; echo Area 1 - Lysine, a positively charged amino acid set echo area1Echo hidden; set echo area2Echo 0% 85%; echo Area 2 - Glutamine, a polar amino acid set echo area2Echo hidden; set echo waitEcho 0% 100% color echo red font echo 18 sans bold echo loading molecular surfaces,|one moment please... refresh isosurface surfNOT25 colorscheme "bwr" "surfNOT25.jvxl" isosurface surfNOT38 colorscheme "bwr" "surfNOT38.jvxl" #isosurface surfNOT42 colorscheme "bwr" "surfNOT42.jvxl" #isosurface surfNOT33 colorscheme "bwr" "surfNOT33.jvxl" isosurface all off isosurface surfALL colorscheme "bwr" "surfALL.jvxl" set echo waitEcho off display all delay 0.1 #res 25, area 1, Lys, script = area1.spt set echo circle1 IMAGE "circle1.gif"; set echo circle1 center; set echo circle1 @{{atomno=393 or atomno=404 or atomno=405 or atomno=406}}; set echo circle1 SCRIPT "script area1.spt;" #res 38, area 2, Gln, script = area2.spt set echo circle2 center; set echo circle2@{{atomno=600 or atomno=601 or atomno=602}}; set echo circle2 IMAGE "circle2.gif"; set echo circle2 SCRIPT "script area2.spt;" #res 42, question 1, script = area3.spt set echo circleQ1 IMAGE "circle.gif"; set echo circleQ1 center; set echo circleQ1@{{atomno=651 or atomno=652}}; set echo circleQ1 hidden; #res 28, question 2, script = area4.spt set echo circleQ2 IMAGE "circle.gif"; set echo circleQ2 center; set echo circleQ2@{{atomno=441 or atomno=442}}; set echo circleQ2 hidden; # res 1, question 4, script = area5.spt set echo circleQ4 IMAGE "circle.gif"; set echo circleQ4 center; set echo circleQ4@{{atomno=1 or atomno=2 or atomno=5 or atomno=6}}; set echo circleQ4 hidden; set echo none color echo yellow set echo instructEcho 0% 100% font echo 14 sans bold echo "Click in a yellow circle to see what's underneath its surface" /* previously on MW: set echo circle3 center; set echo circle3 @{{42 and sidechain}}; set echo circle3 IMAGE "circle3.gif" set echo circle4 center; set echo circle4 @{{33 and sidechain}}; set echo circle4 IMAGE "circle4.gif" */ set echo atomColorEcho 0% 0% font echo 14 sans bold color echo white echo "Atom colors:" set echo carbEcho 25% 0% font echo 14 sans bold color echo gray echo "carbon" set echo oxEcho 40% 0% font echo 14 sans bold color echo red echo "oxygen" set echo nitroEcho 55% 0% font echo 14 sans bold color echo blue echo "nitrogen" set echo hydEcho 70% 0% font echo 14 sans bold color echo white echo "hydrogen"