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Solubility: Summary
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Problem is that the "monomers" of the macromolecule are smaller than the water molecule.
So this page is amphipathic-test to see what happens when I make the water moelcules smalller and the monomers bigger.
And I also changed the L-J interactions.
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org.concord.mw2d.activity.AtomContainer
amphipathic-test$0.mml true
Select Object What's This? Draw Lines Draw Rectangle Draw Ellipse Draw Triangle Mark Object Count Objects Measure Distance Toggle Trajectory Toggle Average Position Add Nt Add Pl Add Ws Add Ck Add Diatomic Molecule Add Triatomic Molecule Add Benzene Add Chain Molecule Add Obstacle Fill Area with Nt Atoms Fill Area with Pl Atoms Fill Area with Ws Atoms Fill Area with Ck Atoms Add Rectangular Molecular Surface Add Rectangular Molecular Ribbon Add Circular Molecular Surface Add Circular Molecular Ribbon Add Curved Molecular Surface Add Curved Molecular Ribbon Add Molecular Surface in Free-Form Shape Add an Amino Acid to Polypeptide Subtract an Amino Acid from Polypeptide Add a Nucleotide to DNA Subtract a Nucleotide from DNA Heat Selected Objects Cool Selected Objects Add Positive Charge Add Negative Charge Increase Restraint Decrease Restraint Increase Damping Decrease Damping Rotate Object Duplicate Object Delete Objects Setup Boundary Change Type Change Velocity Build Radial Bond Create Radial Bond Build Angular Bond
org.concord.mw2d.activity.AtomContainer
amphipathic-test$1.mml true
Select Object What's This? Draw Lines Draw Rectangle Draw Ellipse Draw Triangle Mark Object Count Objects Measure Distance Toggle Trajectory Toggle Average Position Add Nt Add Pl Add Ws Add Ck Add Diatomic Molecule Add Triatomic Molecule Add Benzene Add Chain Molecule Add Obstacle Fill Area with Nt Atoms Fill Area with Pl Atoms Fill Area with Ws Atoms Fill Area with Ck Atoms Add Rectangular Molecular Surface Add Rectangular Molecular Ribbon Add Circular Molecular Surface Add Circular Molecular Ribbon Add Curved Molecular Surface Add Curved Molecular Ribbon Add Molecular Surface in Free-Form Shape Add an Amino Acid to Polypeptide Subtract an Amino Acid from Polypeptide Add a Nucleotide to DNA Subtract a Nucleotide from DNA Heat Selected Objects Cool Selected Objects Add Positive Charge Add Negative Charge Increase Restraint Decrease Restraint Increase Damping Decrease Damping Rotate Object Duplicate Object Delete Objects Setup Boundary Change Type Change Velocity Build Radial Bond Create Radial Bond Build Angular Bond
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