set echo off set echo myecho 0 0 script jmol-echoFade.spt font echo 14 sans bold color echo [xf4f5ef] color echo background none set echo myecho1 0 200 color echo background black script jmol-echoFade.spt #delay 0.2 restrict none display all select all hbonds off cpk off echo "When two polysaccharide chains line up together..." delay 2 echo "When two polysaccharide chains line up together...|hydrogen bonds form between them" delay 3 moveto /* time, axisAngle */ 0.0 { 13 470 883 135.46} /* zoom, translation */ 114.95 0.0 0.0 /* center, rotationRadius */ {4.297226 4.0643153 -0.9957283} 13.833857 /* navigation center, translation, depth */ {0.0 0.0 0.0} 24.028795 4.929878 50.0; select ~chainA wireframe 0.2 color cpk delay 3 moveto /* time, axisAngle */ 3.0 { -901 -431 -47 140.94} /* zoom, translation */ 79.53 -1.88 8.0 /* center, rotationRadius */ {1.8493093 5.740348 -3.2996325} 13.833857 /* navigation center, translation, depth */ {0.0 0.0 0.0} -19.044945 -9.707306 50.0; select ~chainB off2wf delay 1 script hbondsCarb.spt #script phobicInt.spt delay 2 moveto /* time, axisAngle */ 2.0 { -912 -407 -56 141.09} /* zoom, translation */ 140 0.0 0.0 /* center, rotationRadius */ {1.8493093 5.740348 -3.2996325} 13.833857 /* navigation center, translation, depth */ {0.0 0.0 0.0} -28.650494 -33.300076 50.0; delay 1 script jmol-echoFade.spt delay 0.3 echo "In chains that are thousands of sugars long|these interactions add up to a strong force" #set echo myecho 0 25 #echo "Hydrogen bonds are shown in blue " #color echo [xccccff] #color echo background black #set echo myecho1 0 0 #echo "and hydrophobic interactions are in pink " #color echo pink #color echo background black