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codebase
/Users/ddamelin/Desktop/diffusionActiveTrans _05DD
url
/Users/ddamelin/Desktop/diffusionActiveTrans _05DD/test3$0.mml
size
97281
filename
test3$0.mml
date
1225114792000
define %waitingForCaBinding 1;
define %waitingForATPBinding 0;
define %waitingForATPSettling 0;
define %waitingForClearCavity 0;
define %waitingForProteinTransition 0;
define %waitingForCaSettling 0;
define %waitingForATPPocketFormation 0;
define %waitingForCaRelease 0;
define %waitingForFlashTransition 0;
define %waitingForProteinReset 0;
define %topBlockerInPlace 1;
define %bottomBlockerInPlace 1;
define %topParticleIndex -1;
define %bottomParticleIndex -1;
define %caToCapture -1;
define %caToCaptureFar -1;
define %caToCaptureNear -1;
define %restraintSet 0;
define %caLeft 0;
define %caRight 0;
define %proteinX 17.2;
define %proteinY 11.3;
define %proteinImage 0;
define %endTransitionTime 0;
define %thisAtom 0;
define %atp1toCapture 0;
define %atp2toCapture 0;
define %bondToRemove 0;
define %partOfMolecule -1;
define %leftConc 0;
define %rightConc 0;
define %totalChemicalEnergy %number_of_molecules;
define %chemicalEnergy 0;
define %voltage 0;
define %leftConc 0;
define %rightConc 0;
define %i 0;
define %leftWidth 18.6;
define %rightWidth %width-%leftWidth;
define %flashX 23.1;
define %flashY 20.7;
define %atpAtomX 24.9;
define %atpAtomY 20.8;
define %pocket1x 25;
define %pocket1y 19.9
define %pocket2x 25.9;
define %pocket2y 20.4
define %pocket3x 24.9;
define %pocket3y 20.9
define %pocket4x 24.5;
define %pocket4y 21.9;
define %rsurface1x 24;
define %rsurface1y 19.6;
define %rsurface2x 22.9;
define %rsurface2y 19.3;
define %rsurface3x 21.8;
define %rsurface3y 18.9;
define %rsurface4x 20.8;
define %rsurface4y 18.5;
define %rsurface5x 19.9;
define %rsurface5y 17.9;
define %rsurface6x 19.8;
define %rsurface6y 15.3;
define %rsurface7x 20.7;
define %rsurface7y 14.7;
define %rsurface8x 21.9;
define %rsurface8y 14.7;
define %rsurface9x 23;
define %rsurface9y 14.5;
define %rsurface10x 24;
define %rsurface10y 14.2;
define %nonATPsurfaceX 25;
define %nonATPsurfaceY 12.8;
define %lsurface1x 18.4;
define %lsurface1y 12.5;
define %lsurface2x 18.2;
define %lsurface2y 13.8;
define %lsurface3x 19.2;
define %lsurface3y 14.3;
define %lsurface4x 20.5;
define %lsurface4y 14.6;
define %lsurface5x 21.7;
define %lsurface5y 15.1;
define %lsurface6x 22.9;
define %lsurface6y 15.6;
define %lsurface7x 25.8;
define %lsurface7y 15.1;
define %lsurface8x 25.8;
define %lsurface8y 16.2;
define %lsurface9x 23;
define %lsurface9y 18.4;
define %lsurface10x 21.8;
define %lsurface10y 18.9;
define %lsurface11x 20.4;
define %lsurface11y 19.3;
define %lsurface12x 19;
define %lsurface12y 19.5;
define %lsurface13x 17.8;
define %lsurface13y 20.2;
define %lsurface14x 18.3;
define %lsurface14y 21.5;
define %flashImage 0;
define %obsLeftX 17.9;
define %obsRightX 23.6;
define %obsY 13.8;
define %obsWidth 1.4;
define %obsHeight 6.1;
define %leftObs 0;
define %rightObs 0;
define %rightObs2 0;
define %obsRight2x 25.3;
define %obsRight2y 14.6;
define %obsRight2width 0.8;
define %obsRight2height 2.2;
define %proteinAreaX 16;
define %proteinAreaY 12.7;
define %proteinAreaW 11.8;
define %proteinAreaH 8.2;
define %caCount 0;
define %atpCount 0;
define %atomsInProtein 0;
define %pAnchorX 26.6;
define %pAnchorY 18;
define %atpAnchor1x 26.4;
define %atpAnchor1y 22.2;
define %atpAnchor2x 25.4;
define %atpAnchor2y 25;
define %atpRestraintDeltaX 0.02;
define %atpRestraintDeltaY -0.42;
define %caRestraintX 21.1;
define %caRestraintY 16.3;
define %caRestraintDeltaX -0.08;
define %caRestraintDeltaY -0.01;
define %waitingForCa 0;
define %formingATP 1;
define %waitingForATP 2;
define %releasingATP 3;
define %watingForCaRelease 4;
define %restoringProtein 5;
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