UTF-8
DNA Playground 1
14412088
To zoom in, hold down SHIFT while you click and drag on the DNA.
1
org.concord.modeler.PageJContainer
JmolApplet.jar
netscape.jar
org.jmol.applet.MwPlugin
playground1$plugin$0.aps{name="load" value="dna1.pdb"}
{name="nostatepersistence" value="true"}
{name="script" value="#set debugscript true; #console on; script dna-horizontal.spt;"}
700350
-b0a11
Linehttp://mw2.concord.org/public/plugin/dna-horizontal.spt, all-off.spt
1
14true
1
1
org.concord.modeler.PageTextBox
700.0
160.0
<html>
<head>
<style type="text/css">
<!--
.pagetitle { font-family: Verdana, Arial, Helvetica, sans-serif; margin-right: 0px; color: #FFFFFF; margin-top: 0px; margin-left: 0px; margin-bottom: 0px; font-size: 14px }
body { font-family: Verdana, Arial, Helvetica, sans-serif }
.mainidea { font-family: Verdana, Arial, Helvetica, sans-serif; margin-right: 0px; margin-top: 0px; margin-left: 0px; margin-bottom: 0px; font-size: 11px }
body.mainidea { margin-top: 5px }
p { font-size: 11px }
ul { list-style-image: file:/Users/freichsman/Documents/Projects/Concord/RITES/proposed%20activities/DNA%20structure/listBullet.png }
table p { margin-top: 11px; font-size: 11px }
li { font-size: 11px }
body.subhead { background-image: subHeadingBackground.png }
.question { font-family: Arial, Helvetica, sans-serif; margin-right: 0px; font-weight: bold; margin-top: 0px; margin-left: 0px; margin-bottom: 0px; font-size: 11px }
.firstp { margin-right: 0px; margin-top: 0px; margin-left: 0px; margin-bottom: 0px; font-size: 11px }
body.question { margin-top: 5px; background-color: #e6e6e6; margin-left: 5px; margin-bottom: 5px }
.subhead { font-family: Verdana, Arial, Helvetica, sans-serif; margin-right: 0px; font-weight: bold; color: #5c7b67; margin-top: 0px; margin-left: 0px; margin-bottom: 0px; font-size: 14px }
-->
</style>
</head>
<body marginwidth="5" marginheight="10">
<table width="100%" cellpadding="0" border="0">
<tr>
<td align="left" colspan="2">
<b>Show DNA as:</b>
</td>
<td align="left" colspan="2">
<b>Show or hide: </b>
</td>
<td align="left" colspan="2">
<b>Color by:</b>
</td>
<td colspan="2">
<input name="reset" selfscript="selectcomponent cpk true; selectcomponent strand1 true; selectcomponent strand2 true; selectcomponent colorelements true; selectcomponent hbonds false; selectcomponent surface false; selectcomponent center false;" alt="" script="script:nativescript:plugin:1:exit; script all-off.spt; script dna-horizontal.spt;" uid="reset" type="submit" value="Reset Model">
</td>
</tr>
<tr>
<td align="right">
<input name="RadioGroup0" script="script:nativescript:plugin:1:script all-off.spt; wireframe 0.22; cpk 0.45" uid="ballstick" type="radio" checked="checked" value="radio">
</td>
<td>
ball & stick
</td>
<td align="right">
<input name="checkbox-s1" script_selected="script:nativescript:plugin:1:exit; select all; labels off; display displayed or :1; refresh;" script_deselected="script:nativescript:plugin:1:exit; select all; labels off; display displayed and not :1; refresh;" uid="strand1" type="checkbox" checked="checked" value="checkbox">
</td>
<td>
DNA strand 1
</td>
<td align="right" width="4%">
<input name="RadioGroup1" script="script:nativescript:plugin:1:set echo off;
select all; color cpk;
set echo KeyEcho 0% 100%; font echo 14 sans bold; color echo white; echo Color key:;
set echo Carbonecho 25% 100%; color echo gray; font echo 14 sans bold; echo C;
set echo HydrogenEcho 30% 100%; font echo 14 sans bold; color echo white; echo H;
set echo oxyEcho 35% 100%; color echo [xff3233]; font echo 14 sans bold; echo O;
set echo nitroEcho 40% 100%; color echo [xc0baff]; font echo 14 sans bold; echo N;
set echo phosEcho 45% 100%; color echo [xfdc33e]; font echo 14 sans bold; echo P;" uid="colorelements" type="radio" checked="checked" value="radio">
</td>
<td width="22%">
atom (carbon, etc.)
</td>
<td colspan="2">
  <b>Center of rotation:</b> 
</td>
</tr>
<tr>
<td align="right">
<input name="RadioGroup0" script="script:nativescript:plugin:1:script all-off.spt; cartoon on; select bases and all; wireframe 0.2; select all" uid="ladder" type="radio" value="radio">
</td>
<td>
ladder
</td>
<td align="right">
<input name="checkbox-s2" script_selected="script:nativescript:plugin:1:exit; select all; labels off; display displayed or :2; refresh;" script_deselected="script:nativescript:plugin:1:exit; select all; labels off; display displayed and not :2; refresh;" uid="strand2" type="checkbox" checked="checked" value="checkbox">
</td>
<td>
DNA strand 2
</td>
<td align="right">
<input name="RadioGroup1" script="script:nativescript:plugin:1:set echo off; select [A]; color blue; select [T]; color yellow; select [G]; color green; select [C]; color red; select all; set echo KeyEcho 0% 100%; font echo 14 sans bold; color echo white; echo Color key:; set echo Aecho 20% 92%; color echo blue; font echo 22 sans bold; echo A; set echo Cecho 25% 100%; color echo red; font echo 22 sans bold; echo C; set echo Decho 30% 92%; color echo green; font echo 22 sans bold; echo G; set echo Techo 35% 92%; color echo yellow; font echo 22 sans bold; echo T;" uid="colorbases" type="radio" value="radio">
</td>
<td>
nucleotide base (A,C,G,T)
</td>
<td align="right" valign="top" width="4%" rowspan="2">
<input name="checkbox" script_selected="script:nativescript:plugin:1:set picking center" script_deselected="script:jmol:1:set picking ident" uid="center" type="checkbox" value="checkbox">
</td>
<td align="left" valign="top" width="29%" rowspan="2">
Click on an atom to center it. (Un-check when done.)
</td>
</tr>
<tr>
<td align="right">
<input name="RadioGroup0" script="script:nativescript:plugin:1:script all-off.spt; cpk;" uid="cpk" type="radio" value="radio">
</td>
<td>
spacefill atoms
</td>
<td align="right">
<input name="checkbox-h" script_selected="script:nativescript:plugin:1:select all; hbonds 0.2;" script_deselected="script:nativescript:plugin:1:select all; hbonds off;" uid="hbonds" type="checkbox" value="checkbox">
</td>
<td>
H-bonds
</td>
<td align="right">
<input name="RadioGroup1" script="script:nativescript:plugin:1:set echo off; select :1; color purple; select :2; color gold; select all" uid="colorstrands" type="radio" value="radio">
</td>
<td>
DNA strand
</td>
</tr>
<tr>
<td align="right">
 
</td>
<td>
 
</td>
<td align="right">
 
</td>
<td>
 
</td>
<td align="right">
 
</td>
<td colspan="3">
 
</td>
</tr>
</table>
</body>
</html>
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