false300.0600300600.050048false25525525525512812812825510321044300.010.0300.0filenameMenicucci_final Project$0.mmldate1386641561000url/Users/cmenicu/Library/Application Support/Molecular Workbench/cache/Menicucci_final Project/Menicucci_final Project$0.mmlsize55489codebasedefine %rg1 0;
define %rg2 0;
define %temp 790;Compute the radius of gyrationCALC_RGset %rg1 %molecule[0].radius_of_gyration;
set %rg2 %molecule[1].radius_of_gyration;
store 1 %rg1;
store 0 %rg2;Control the temperatures of the two compartments independently50HEAT_BATHshow selectionhalo off;
select atom within (0, 0, %obstacle[0].x, %height);
set kelvin %temp;
select atom not selected;
set kelvin %temp;
select atom none;
show selectionhalo on;000255None-3355393-16711732-13159255025525500255255false112255128192255Arial01025525525525514class org.concord.mw2d.models.Atom121448.936981201171997.39225006103516112Arial01038class org.concord.mw2d.models.Atom1120102.40597534179688130.137786865234381false404.0524904583644121.556730091246930.0021940796047461450.075146104693094061false408.7352792368823135.54035584393785-0.03200383676822907-2.5469315194879866E-41false420.3772631109482144.881697479033680.015227663511032557-0.036579087374686731false424.62182048881573159.06121988410166-0.019044262326930550.0028413445198164391false435.3632558434068170.2463880923408-0.0060178626657744270.00541984017591967251false446.41600332098227159.13922661709623-0.00816385458525207-0.0228472945469114821false461.7294551240176161.25388087227495-0.0175073643035452730.017481664463001311false474.97866097846423154.70946857618833-0.0169473903618601940.0147965687561277451false485.1656581094503143.77219063596690.034194136919184060.040329973471163131false474.080440436012133.53026451056914-0.02333371365293527-0.068415571938718071false10.0459.47114760596946136.46964108432508459.3831489004013136.15695554778787-0.052310995345907524-0.0364774733451570041false445.5914247033753131.582622584049-0.003616906547219738-0.03809753583362191false437.6227443677537119.61546804679648-0.01707825526108042-0.052336431067556611false446.3725012634078107.07680846811655-0.00322361194940101740.0081244038448963861false461.43697277110846106.8922521739328.624906317968106E-4-0.0128049819831558471false471.40136052149395.051603035781470.01785204809138880.070903236428609181false464.1819004098857782.26544458579525-0.02465491127389179-0.061077953213597951false449.596885228778379.73961595964812-0.02242615331540870.043694513595440981false435.177639723899484.15643801514605-0.03711648751668302-0.044488228163794951false426.027805645261696.14903569023383-0.026225223784634783-0.0354517435860276861false411.7570034808066599.30301396285854-0.0209563559808312560.052368094023083221false396.916996224678794.847777196489740.06796329627522485-0.01878929499007141false386.5370508634228582.759468610181430.0157253809814429930.0139968087566696661false398.3316437112976672.39551604940803-0.00508681838296364250.032550168717603051false182.12584209801419.14464707874755-0.06410225358082425-0.0245149039232871941false186.830482556363732.885952839863485-0.055647411929038680.082378572733917921false198.509185822143241.63920226268026-0.00344150571010076650.046842588495536541false214.2683570456867747.203325755862360.034260156532198270.0024079001763330821false219.7055339718989260.30439124251747-0.012922239020133770.050528854115880371false208.351238417730768.468000485935660.007601704096198799-0.045393427827994461false197.969616064460780.1384961669380.030239554050192873-0.057669964044757291false198.5053235235922795.22138096824773-0.0064688458615149080.0433883653196651051false184.60135368910488101.577023386270310.027599236197043756-0.0522604416609972061false175.87788709471786113.80669098145063-0.0018226772232068586-0.0220833409221239331false170.6671158143627127.30329079261436-0.0090714402845262155.123989694290526E-41false10.0153.5382131435664130.10615812108364154.55514471527562128.188167735963360.0088671734258196960.048026355539886721false140.16826195710306127.57000814132641-0.0535512711410934540.0217317306297204641false124.74513165719455128.043752948629020.03555733536872821-0.0387865334331515961false114.90597726746904139.6377901218926-0.0510753392525769-0.067303366626158281false107.70307653741223153.1604992991828-0.002727641372606589-0.068294449140086451false93.2260626686301151.113584546799-0.008585906193852840.0345633646975409341false79.57291519596527145.97675911603008-0.09343044941141256-0.0194527467834002061false65.69984709292847139.4934954058353-0.0164539023416025340.0177030139627211151false49.929240116762905141.15542335545615-0.016402975088530836-0.0372637982862429541false40.68687119734423154.64363141249726-0.014556083164666070.00155577705170481071false25.894930192185026149.138696102882650.097447996577633-0.0109500018048833661false13.510159929239014141.348389220218760.03543325211659219-0.00537006623501792151false13.761812262382945125.633035893021870.013357411490539260.05582931753072157446115.00.22115.00.23215.00.24315.00.25415.00.26515.00.27615.00.28715.00.29815.00.210915.00.2111015.00.2121115.00.2131215.00.2141315.00.2151415.00.2161515.00.2171615.00.2181715.00.2191815.00.2201915.00.2212015.00.2222115.00.2232215.00.2252415.00.2262515.00.2272615.00.2282715.00.2292815.00.2302915.00.2313015.00.2323115.00.2333215.00.2343315.00.2353415.00.2363515.00.2373615.00.2383715.00.2393815.00.2403915.00.2414015.00.2424115.00.2434215.00.2444315.00.2454415.00.2464515.00.2474615.00.2